TOMATOMICS

tomatomics  The Tomato Integrated Database

Publication
Publications & References
1 Masaaki Kobayashi, Hideki Nagasaki, Virginie Garcia, Daniel Just, Ce'cile Bres, Jean-Philippe Mauxion, Marie-Christine Le Paslier, Dominique Brunel, Kunihiro Suda, Yohei Minakuchi, Atsushi Toyoda, Asao Fujiyama, Hiromi Toyoshima, Takayuki Suzuki, Kaori Igarashi, Christophe Rothan, Eli Kaminuma, Yasukazu Nakamura, Kentaro Yano, Koh Aoki (2013) Genome-wide analysis of intraspecific DNA polymorphism in ‘Micro-Tom’, a model cultivar of tomato. (Solanum lycopersicum) Plant and Cell Physiology : doi: 10.1093/pcp/pct181. (First published online : December 5, 2013)
2 Rui Yan, Naoki Yokotani, Tatsuya Yamaoka, Kohichiro Ushijima, Ryohei Nakano, Kentaro Yano, Koh Aoki, Yasutaka Kubo (2013) Characterization of ripening-associated genes using a tomato DNA macroarray, 1-methylcyclopropene, and ripening-impaired mutants. Postharvest Biol Technol 86 : 159-70.
3 Erika Asamizu, Kenta Shirasawa, Hideki Hirakawa, Shusei Sato, Satoshi Tabata, Kentaro Yano, Tohru Ariizumi, Daisuke Shibata, Hiroshi Ezura (2012) Mapping of Micro-Tom BAC-end Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms. International Journal of Plant Genomics : 8 pages. (2012 Nov. 27)
4 Fabien Mounet, Annick Moing, Mariusz Kowalczyk, Johannes Rohrmann, Johann Petit, Virginie Garcia, Mickael Maucourt, Kentaro Yano, Catherine Deborde, Koh Aoki, Hélène Bèrges, Antonio Granell, Alisdair R. Fernie, Catherine Bellini, Christophe Rothan, Martine Lemaire-Chamley (2012) Down-regulation of a Single Auxin Efflux Transport Protein in Tomato Induces Precocious Fruit Development. Journal of Experimental Botany 63 (13) : 4901-4917. (2012 Jul. 27)
5 The Tomato Genome Consortium (2012) The Tomato Genome Sequence Provides Insights into Fleshy Fruit Evolution. Nature 485 : 635- 641. (2012 May 30)
6 K. Hamada, K. Hongo, K. Suwabe, A. Shimizu, T. Nagayama, R. Abe, S. Kikuchi, N. Yamamoto, T. Fujii, K. Yokoyama, H. Tsuchida, K. Sano, T. Mochizuki, N. Oki, Y. Horiuchi, M. Fujita, M. Watanabe, M. Matsuoka, N. Kurata and K. Yano (2011) OryzaExpress: An integrated database of gene expression networks and omics annotations in rice. Plant Cell Physiol. 52: 220-229. (Reference of Gene Expression Network)
7 K. Aoki, K. Yano, A. Suzuki, S. Kawamura, N. Sakurai, K. Suda, A. Kurabayashi, T. Suzuki, T. Tsugane, M. Watanabe, K. Ooga, M. Torii, T. Narita, T. Shin-i, Y. Kohara, N. Yamamoto, H. Takahashi, Y. Watanabe, M. Egusa, M. Kodama, Y. Ichinose, M. Kikuchi, S. Fukushima, A. Okabe, T. Arie, Y. Sato, K. Yazawa, S. Satoh, T. Omura, H. Ezura and D. Shibata (2010) Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics 2010, 11:210.
8 K. Aoki, K. Yano, N. Sakurai, T. Tsugane, M. Watanabe, Y.-G. Yin, C. Matsukura, D. Shibata (2007) Expressed-based approach toward functional characterization of tomato genes that have no or weak similarity to Arabidopsis genes. Acta Hortic. 745, 457-464.
9 K. Yano, M. Watanabe, N. Yamamoto, T. Tsugane, K. Aoki, N. Sakurai and D. Shibata (2006) MiBASE: A database of a miniature tomato cultivar Micro-Tom. Plant Biotechnology, 23, 195-198.
10 T. Tsugane, M. Watanabe, K. Yano, N. Sakurai, H. Suzuki and D. Shibata (2005) Expressed sequence tags of full-length cDNA clones from the miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom. Plant Biotechnology, 22, 161-165.
11 N. Yamamoto, T. Tsugane, M. Watanabe, K. Yano, F. Maeda, C. Kuwata, T. Moez, Y. Ban, S. Nishimura and D. Shibata (2005) Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars. GENE, 356, 127-134.