TOMATOMICS

tomatomics  The Tomato Integrated Database

Link
Tomato and other Solanaceae plant databases
Website Description
KaFTom Database for Micro-Tom full-length cDNA clones constructed in our project
MiBASE Database for Micro-Tom ESTs and tomato unigenes constructed in our project
The SOL Genomics Network Database for genomic, genetic and taxonomic information for species in Solanaceae
TomDB (inMIPS) Database for the tomato genome database
DFCI Tomato Gene Index Database for publicly available ESTs and unigenes for tomato
NBRP The National BioResource Project (NBRP) is a national project that aims to collect, preserve, and provide bioresources for life sciences research
JSOL JSOL (Japan Solanaceae Consortium) is a research organization of solanaceae, aims to streamline a data resource, and to exchange information among researcher.
NASUKA Mailing List This mailing list opened as a forum for researchers who are interested in the solanaceous plants and the allied species, to exchange.
Sequence databases
Website Description
GenBank Nucleotide sequence database maintained by the National Center for Biotechnology Information (NCBI) in the USA
DDBJ Nucleotide sequence database at the National institude of Genetics (NIG) in Japan
EMBL Nucleotide sequence database at European Bioinformatics institude (EBI) in the UK
dbEST EST database for each organism in NCBI
UniGene Unigene database for each organism in NCBI
dbGSS Genome survey sequences (GSS) database for each organism in NCBI
Gene expression databases
Website Description
GEO Providing data from microarray, serial analysis of gene expression (SAGE), and mass spectrometry proteomics
ArrayExpress Database for gene expression data from microarray experiments in EBI
SGED Database for Solanaceae expression data using potato cDNA microarrays
TED tomato microarray datawarehouse and databases for tomato microarray expression data and tomato digital expression data
CGEP Website ofThe Center for Gene Expression Profiling (CGEP) for high quality tomato cDNA microarrays
Metabolite and metabolic pathway databases
Website Description
KEGG Database for metabolic pathways, genes, protein families, ligands, drugs, diseases and so on
LycoCyc Tomato metabolic pathway database
Metabolome Tomato Database (MoTo DB) Metablite database dedicated to liquid chromatography-mass spectrometry-based metabolomics of tomato fruit
Genomic Resources
Website Description
TGRC Genbank of wild relatives, monogenic mutants and miscellaneous genetic stocks of tomato at Tomato Genetics Resource Center
Tools
Website Description
BioPerl for multiple alignment images  
Others
Website Description
RAP-DB Database of The Rice Annotation Project providing access to the rice annotation data
TAIR Website of The Institute for Genomic Research (TIGR) providing information for analyzing genomes
Populus trichocarpa Genome Database for Populus trichocarpa genome
The NCBI Entrez Genome Project database Database for complete and incomplete large-scale sequencing projects for cellular organisms
Gene ontology Website of Gene Ontology Consortium
Plant ontology Website of Plant Ontology Consortium