TOMATOMICS

tomatomics  The Tomato Integrated Database

Genome Sequence Search
 
Search for genome sequence and BAC clone (cv. Heinz 1706) with sequence homology against KTU4.

Input "KTU4 name(s)", "Chromosome name(s) (SGN v2.40)", "BAC clone name(s)".
Put a name in each line.
Upload a file :  Chromosome
Sequence similarity between KTU4 and genome sequences:
  Identity (%)  >= Coverage (%)  >=

The protein coding sequences (CDS) prediction method from KTU4 and genomic sequences from SGN is as below.

[1] Genomic sequences were searched by BLASTN (1e-10).
[2] To obtain putative exon and intron sequences, KTU4 sequences and genomic sequences were aligned by est2genome.
[3] Putative CDS were obtained from exons in genomic sequences.
[4] Translated CDS with 3 ORFs were obtained as putative protein sequences.

Example

[KTU4 name]
KTU4-H00077
KTU4-B13619
KTU4-E25889

[Chromosome name (SGN v2.40)]
SL2.40ch00
SL2.40ch12

[BAC clone name]
C01HBa0245N21
C06HBa0286N17