- The Tomato Integrated Database -

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File name Date File size Content
Micro-Tom_full_length_cDNA-HTC.fa.gz 24, July, 2015 5.7 MB Sequenses of Micro-Tom full length cDNAs (HTCs) (Aoki et al., BMC Genomics 2010, 11:210)
Micro-Tom_full_length_cDNA-HTC-CDS_of_longest_frames.fa.gz 24, July, 2015 3.4 MB The longest frames (CDS) in each Micro-Tom full length cDNAs (HTCs)
Micro-Tom_full_length_cDNA-HTC-amino_acid_of_longest_frame.fa.gz 24, July, 2015 2.3 MB Amino acid sequenses from the longest frames (CDSs) of each Micro-Tom full length cDNAs (HTCs)
Micro-Tom_full_length_cDNA-HTC-amino_acid_of_all_frames.fa.gz 24, July, 2015 8.6 MB Amino acid sequenses from all frames of each Micro-Tom full length cDNAs (HTCs)
S_pennellii_EST_ID-vs-ITAG2.4_gene_model_ID.txt.gz 24, July, 2015 56 KB Corresponding identifiers in ITAG2.4 gene models for each S. pennellii ESTs
S_habrochaites_EST_ID-vs-ITAG2.4_gene_model_ID.txt.gz 24, July, 2015 48 KB Corresponding identifiers in ITAG2.4 gene models for each S. habrochaites ESTs
TMCSv1.2.1.gff3.gz 15, July, 2016 7.9 MB Gene structure information of TMCS gene models in GFF format
TMCSv1.2.1_transcript.fasta.gz 15, July, 2016 15 MB Transcript sequences of TMCS gene models in FASTA format
TMCSv1.2.1_protein.fasta.gz 15, July, 2016 8.0 MB Protein sequences of TMCS gene models in FASTA format
Heinz_1706_SL2.50_vs_Micro-Tom_DRR000741_variants.vcf.gz 22, July, 2016 85 MB Predicted SNPs and InDels between Heinz 1706 SL2.50 genome sequences and Micro-Tom genome sequences (DRR000741) in VCF format

'TOMATOMICS' has been developed and maintained by Bioinformatics Laboratory of Meiji University. Last Modified Jul. 31, 2017.