Species Download
Arabidopsis thaliana Arabidopsis_thaliana_expression.zip
Oryza sativa Oryza_sativa_expression.zip
Solanum lycopersicum Solanum_lycopersicum_expression.zip
Sorghum bicolor Sorghum_bicolor_expression.zip
Vitis vinifera Vitis_vinifera_expression.zip
Solanum tuberosum Solanum_tuberosum_expression.zip
Medicago truncatula Medicago_truncatula_expression.zip
Glycine max Glycine_max_expression.zip

Information about ortholog group is provided in two forms: Ortholog_group.zip, and Ortholog_list.zip.

First column shows ortholog group IDs (e.g. OG23675); second column contains gene models classified in each ortholog group (first column). In the second column, all gene models from all species in each ortholog group are enumerated in a space-separated manner (e.g. VIT_200s0184g00020.1 AT3G25120.1 Glyma.17G151300.1.p Medtr8g012725.1 Solyc06g007800.2.1 PGSC0003DMP400038101 Os04t0376100-01 Sobic.006G041800.1.p).

First column shows ortholog list IDs (e.g. OG10025.3702.7); second column represents ortholog group IDs (e.g. OG10025); third column contains a gene model in each record (e.g. AT5G63710.1). Format of the ortholog list ID is ["ortholog group ID"].["taxon number"].["member ID"].

initially downloaded samples

Species Download

Arabidopsis thaliana (709 samples)

Arabidopsis_thaliana_pre_filtering_list.zip

Oryza sativa (221 samples)

Oryza_sativa_pre_filtering_list.zip

Solanum lycopersicum (199 samples)

Solanum_lycopersicum_pre_filtering_list.zip

Sorghum bicolor (37 samples)

Sorghum_bicolor_pre_filtering_list.zip

Vitis vinifera (41 samples)

Vitis_vinifera_pre_filtering_list.zip

Solanum tuberosum (114 samples)

Solanum_tuberosum_pre_filtering_list.zip

Medicago truncatula (34 samples)

Medicago_truncatula_pre_filtering_list.zip

Glycine max (345 samples)

Glycine_max_pre_filtering_list.zip

quality controlled samples

Species Download

Arabidopsis thaliana (264 samples)

Arabidopsis_thaliana_after_filtering_list.zip

Oryza sativa (73 samples)

Oryza_sativa_after_filtering_list.zip

Solanum lycopersicum (120 samples)

Solanum_lycopersicum_after_filtering_list.zip

Sorghum bicolor (37 samples)

Sorghum_bicolor_after_filtering_list.zip

Vitis vinifera (36 samples)

Vitis_vinifera_after_filtering_list.zip

Solanum tuberosum (34 samples)

Solanum_tuberosum_after_filtering_list.zip

Medicago truncatula (33 samples)

Medicago_truncatula_after_filtering_list.zip

Glycine max (148 samples)

Glycine_max_after_filtering_list.zip

Download Target Selector

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 By checking intra-species boxes in green cells, similar expression relationship among the queries are shown in GEN viewer, and paralogs, isoforms, and similarly expressed genes (SEGs) of the queries are added into the GEN.
 By checking inter-species boxes in yellow cells, orthologs of the queries are added to the GEN.