Archive for November 2012

業績(論文・著書など)

Posted by: kyanobi

査読付論文

  1. Masaaki Kobayashi, Hajime Ohyanagi, Hideki Takanashi, Satomi Asano, Toru Kudo, Hiromi Kanegae, Atsushi J. Nagano, Hitoshi Tainaka, Tsuyosi Tokunaga, Takashi Sazuka, Hiroyoshi Iwata, Nobuhiro Tsutsumi, Kentaro Yano (2017) Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data. DNA Research 24(4):397-405. doi: 10.1093/dnares/dsx012. (May 11, 2017).
  2. Kakeru Watanabe, Wei Guo, Keigo Arai, Hiromi Kajiya-Kanegae, Hideki Takanashi, Masaaki Kobayashi, Kentaro Yano, Tsuyoshi Tokunaga, Toru Fujiwara, Nobuhiro Tsutsuimi, Hiroyoshi Iwata (2017) High-throughput phenotyping of sorghum plant height using an unmanned aerial vehicle and its application to genomic prediction modelling. Frontiers in Plant Science 8 (421): doi:10.3389/fpls.2017.00421 (Epub: March 13, 2017)
  3. Yaichi Kawakatsu, Hokuto Nakayama, Kaori Kaminoyama, Kaori Igarashi, Masaki Yasugi, Hiroshi Kudoh, Atsushi J. Nagano, Kentaro Yano, Nakao Kubo, Seisuke Kimura (2017) A GLABRA1 ortholog on LG A9 controls trichome number in the Japanese leafy vegetables Mizuna and Mibuna (Brassica rapa subsp. nipposinica): evidence from QTL analysis. Journal of Plant Research 130(3):539-550. doi:10.1007/s10265-017-0917-5 (Epub: March 3, 2017).
  4. Chisato Endo, Naoki Yamamoto, Masaaki Kobayashi, Yukino Nakamura, Koji Yokoyama, Takamitsu Kurusu, Kentaro Yano, Yuichi Tada (2017) Development of simple sequence repeat markers in the halophytic turf grass Sporobolus virginicus and transferable genotyping across multiple grass genera/species/genotypes. Euphytica 213:56 doi:10.1007/s10681-017-1846-z (February 2017, Epub: February 3, 2017).
  5. Toru Kudo, Shin Terashima, Yuno Takaki, Ken Tomita, Misa Saito, Maasa Kanno, Koji Yokoyama, and Kentaro Yano* (*; Corresponding authors) (2017) PlantExpress: A Database Integrating OryzaExpress and ArthaExpress for Single-species and Cross-species Gene Expression Network Analyses with Microarray-Based Transcriptome Data. Plant & Cell Physiology 58(1):e1 doi.org/10.1093/pcp/pcw208 (January 2017, Epub: January 27, 2017).
  6. Toru Kudo†, Masaaki Kobayashi†, Shin Terashima, Minami Katayama, Soichi Ozaki, Maasa Kanno, Misa Saito, Koji Yokoyama, Hajime Ohyanagi, Koh Aoki, Yasutaka Kubo and Kentaro Yano* (†; Contributed equally to this study, *; Corresponding authors) (2017) TOMATOMICS: A Web Database for Integrated Omics Information in Tomato. Plant & Cell Physiology 58(1):e8. 58(1):e1 doi.org/10.1093/pcp/pcw207 (January 2017, Epub: January 27, 2017).
  7. Yukino Nakamura, Toru Kudo, Shin Terashima, Misa Saito, Eiji Nambara, Kentaro Yano* (*; Corresponding authors) (2017) CATchUP: A web database for spatiotemporally regulated genes. Plant & Cell Physiology 58(1):e3. doi:10.1093/pcp/pcw199 (January 2017, Epub: December 23, 2016).
  8. Tomohiro Suzuki, Naoki Yamamoto, Jae-Hoon Choi, Tomoyuki Takano, Yohei Sasaki, Yurika Terashima, Akinobu Ito, Hideo Dohra, Hirofumi Hirai, Yukino Nakamura, Kentaro Yano*, Hirokazu Kawagishi* (*; Corresponding authors) (2016) The biosynthetic pathway of 2-azahypoxanthine in fairy-ring forming fungus. Scientific Reports 6:39087. doi:10.1038/srep39087 (December 2016, Epub: December 19, 2016).
  9. Toru Kudo, Yohei Sasaki, Shin Terashima, Noriko Matsuda-Imai, Tomoyuki Takano, Misa Saito, Maasa Kanno, Soichi Ozaki, Keita Suwabe, Go Suzuki, Masao Watanabe, Makoto Matsuoka, Seiji Takayama, Kentaro Yano* (*. Authors for correspondence) (2016) Identification of reference genes for quantitative expression analysis using large-scale RNA-seq data of Arabidopsis thaliana and model crop plants. Genes & Genetic Systems 91(2):111-125. doi:10.1266/ggs.15-00065 (October 2016, Epub: April 1, 2016).
  10. Shunsuke Maeda, Satomi Sakazono, Hiromi Masuko-Suzuki, Midori Taguchi, Kaori Yamamura, Kuniaki Nagano, Takashi Endo, Kenichi Saeki, Masaaki Osaka, Moe Nabemoto, Kana Ito, Toru Kudo, Masaaki Kobayashi, Mizuho Kawagishi, Kotomi Fujita, Hikaru Nanjo, Tomoe Shindo, Kentaro Yano, Go Suzuki, Keita Suwabe, and Masao Watanabe (2016) Comparative analysis of microRNA profiles of rice anthers between cool-sensitive and cool-tolerant cultivars under cool-temperature stress. Genes & Genetic Systems 91:97-109. doi:10.1266/ggs.15-00056 (October 2016, Epub: March 25, 2016).
  11. Chonprakun Thagun, Shunsuke Imanishi, Toru Kudo, Ryo Nakabayashi, Kiyoshi Ohyama, Tetsuya Mori, Koichi Kawamoto, Yukino Nakamura, Minami Katayama, Satoko Nonaka, Chiaki Matsukura, Kentaro Yano, Hiroshi Ezura, Kazuki Saito, Takashi Hashimoto, and Tsubasa Shoji (2016) Jasmonate-responsive ERF transcription factors regulate steroidal glycoalkaloid biosynthesis in tomato. Plant & Cell Physiology 57(5):961-975 doi:10.1093/pcp/pcw067 (May 2016, Epub: April 15, 2016).
  12. Naoki Yamamoto†, Toru Kudo†, Shoko Fujiwara†*, Yukiko Takatsuka, Yasutaka Hirokawa, Mikio Tsuzuki, Tomoyuki Takano, Masaaki Kobayashi, Kunihiro Suda, Erika Asamizu, Koji Yokoyama, Daisuke Shibata, Satoshi Tabata and Kentaro Yano* († These authors contributed equally to this work, *. Authors for correspondence) (2016) Pleurochrysome: A web-database of Pleurochrysis transcripts and orthologues among heterogeneous algae. Plant & Cell Physiology 57(1):e6 doi:10.1093/pcp/pcv195 (January 2016, Epub: January 7, 2016).
  13. Yoshitsugu Hirose, Kunihiro Suda, Yao-Guang Liu, Shusei Sato, Yukino Nakamura, Koji Yokoyama, Naoki Yamamoto, Shigeru Hanano, Eiji Takita, Nozomu Sakurai, Hideyuki Suzuki, Yasukazu Nakamura, Takakazu Kaneko, Kentaro Yano, Satoshi Tabata and Daisuke Shibata (2015) The Arabidopsis TAC Position Viewer: a high-resolution map of transformation-competent artificial chromosome (TAC) clones aligned with the Arabidopsis thaliana Columbia-0 genome. The Plant Journal 83(6):1114-1122. doi: 10.1111/tpj.12949 (8 September 2015, Epub: July 30 2015) News.
  14. Naoki Yamamoto†, Tomoyuki Takano†, Keisuke Tanaka, Taichiro Ishige, Shin Terashima, Chisato Endo, Takamtisu Kurusu, Shunsuke Yajima, Kentaro Yano*, Yuichi Tada* († These authors contributed equally to this work. *Corresponding authors) (2015) Comprehensive analysis of transcriptome response to salinity stress in the halophytic turf grass Sporobolus virginicus. Frontiers in Plant Science 6: 241 doi:10.3389/fpls.2015.00241 (21 April 2015, Epub: March 26, 2015).
  15. Koichiro Aya, Masaaki Kobayashi, Junmu Tanaka, Hajime Ohyanagi, Takayuki Suzuki, Kenji Yano, Tomoyuki Takano, Kentaro Yano, Makoto Matsuoka (2015) De Novo Transcriptome Assembly of a Fern, Lygodium japonicum, and a Web Resource Database, Ljtrans DB. Plant & Cell Physiology 56(1):e5 doi:10.1093/pcp/pcu184 (January 2015, Epub: December 4, 2014).
  16. Hajime Ohyanagi†, Tomoyuki Takano†, Shin Terashima†, Masaaki Kobayashi, Maasa Kanno, Kyoko Morimoto, Hiromi Kanegae, Yohei Sasaki, Misa Saito, Satomi Asano, Soichi Ozaki, Toru Kudo, Koji Yokoyama, Koichiro Aya, Keita Suwabe, Go Suzuki, Koh Aoki, Yasutaka Kubo, Masao Watanabe, Makoto Matsuoka, Kentaro Yano* († These authors contributed equally to this work. *Corresponding author) (2015) Plant Omics Data Center: An Integrated Web Repository for Interspecies Gene Expression Networks with NLP-based Curation. Plant & Cell Physiology 56(1):e9 doi:10.1093/pcp/pcu188 (January 2015, Epub: December 11, 2014).
  17. Naoki Yamamoto†, Tomohiro Suzuki†, Masaaki Kobayashi, Hideo Dohra, Yohei Sasaki, Hirofumi Hirai, Koji Yokoyama, Hirokazu Kawagishi*, Kentaro Yano* († These authors contributed equally to this work. *Corresponding authors) (2014) A-WINGS: an integrated genome database for Pleurocybella porrigens (Angel's wing oyster mushroom, Sugihiratake). BMC Research Notes 7:866. doi:10.1186/1756-0500-7-866 (December 3, 2014).
  18. Akira Nakatsuka, Tsuyoshi Nakagawa, Kentaro Yano, Ningjing Sun, Hiroaki Sakata, Kayoko Koyama, Nobuo Kobayashi, Tomoya Esumi, Hiroyuki Itamura (2014) Gene Expression of Pectic Polysaccharide Degrading Enzymes in On-tree Softened 'Hiratanenashi' Persimmon Fruit. Food Preservation Science 40(4):185-193. (July 31, 2014).
  19. Haruyasu Hamada, Takamitsu Kurusu, Hiroshi Nokajima, Masahiro Kiyoduka, Kentaro Yano, Kazuyuki Kuchitsu (2014) Regulation of xylanase elicitor-induced expression of defense-related genes involved in phytoalexin biosynthesis by a cation channel OsTPC1 in suspension-cultured rice cells. Plant Biotechnology 31(4):329-334. doi:10.5511/plantbiotechnology.14.0805b (December 2014, Epub: November 15, 2014).
  20. Tsuyoshi Habu, Hisayo Yamane, Ryuta Sasaki, Kentaro Yano, Hiroshi Fujii, Tokurou Shimizu, Toshiya Yamamoto, Ryutaro Tao (2013) Custom Microarray Analysis for Transcript Profiling of Dormant Vegetative Buds of Japanese Apricot during Prolonged Chilling Exposure. Journal of the Japanese Society for Horticultural Science 83(1):1-16. doi:10.2503/jjshs1.CH-077 (March 20, 2014, Epub: December 7, 2013).
  21. Masaaki Kobayashi, Hideki Nagasaki, Virginie Garcia, Daniel Just, Cecile Bres, Jean-Philippe Mauxion, Marie-Christine Le Paslier, Dominique Brunel, Kunihiro Suda, Yohei Minakuchi, Atsushi Toyoda, Asao Fujiyama, Hiromi Toyoshima, Takayuki Suzuki, Kaori Igarashi, Christophe Rothan, Eli Kaminuma, Yasukazu Nakamura, Kentaro Yano, Koh Aoki (2013) Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum). Plant & Cell Physiology 55(2): 445-454. doi:10.1093/pcp/pct181 (February 3, 2014, E-pub: December 5, 2013).
  22. Rui Yan, Naoki Yokotani, Tatsuya Yamaoka, Kohichiro Ushijima, Ryohei Nakano, Kentaro Yano, Koh Aoki, Yasutaka Kubo (2013) Characterization of ripening-associated genes using a tomato DNA macroarray, 1-methylcyclopropene, and ripening-impaired mutants. Postharvest Biology and Technology 86: 159-170. doi:10.1016/j.postharvbio.2013.06.028 (December 2013, Epub: July 21, 2013).
  23. Masaaki Osaka, Tomoki Matsuda, Satomi Sakazono, Hiromi Masuko-Suzuki, Shunsuke Maeda, Misato Sewaki, Mikako Sone, Hirokazu Takahashi, Mikio Nakazono, Megumi Iwano, Seiji Takayama, Kentaro K. Shimizu, Kentaro Yano, Yong Pyo Lim, Go Suzuki, Keita Suwabe, Masao Watanabe (2013) Cell type-specific transcriptome of Brassicaceae stigmatic papilla cells from a combination of laser microdissection and RNA sequencing. Plant & Cell Physiology 54 (11) : 1894-1906. doi:10.1093/pcp/pct133 (October 31, 2013, Epub: September 20, 2013).
  24. Akira Nakatsuka, Hiroyuki Itamura, Kentaro Yano, Reina Abe, Takumi Someya, Tsuyoshi Nakagawa (2013). ANALYSIS OF EXPRESSED SEQUENCE TAGS FROM RAPIDLY SOFTENED PULP OF PERSIMMON (DIOSPYROS KAKI THUNB.). Acta Horticulturae (International Society for Horticultural Science) 996:111-116.
  25. Tomohiro Suzuki, Kaori Igarashi, Hideo Dohra, Takumi Someya, Tomoyuki Takano, Kiyonori Harada, Saori Omae, Hirofumi Hirai, Kentaro Yano*, Hirokazu Kawagishi* (*Corresponding authors) (2013) A New Omics Data Resource of Pleurocybella porrigens for Gene Discovery. PLOS ONE 8 (7): e69681. doi:10.1371/journal.pone.0069681 (Epub: July 23, 2013).
  26. Hiroyuki Itamura, Akira Nakatsuka, NingJing Sun, Tomoya Esumi, Ayako Yamada, Kentaro Yano, Tsuyoshi Nakagawa (2013) EFFECT OF ASCORBATE ON PROLONGING SHELF LIFE OF PERSIMMON (DIOSPYROS KAKI THUNB.) FRUIT. Acta Horticulturae (International Society for Horticultural Science) 989:131-138.
  27. Erika Asamizu, Kenta Shirasawa, Hideki Hirakawa, Shusei Sato, Satoshi Tabata, Kentaro Yano, Tohru Ariizumi, Daisuke Shibata, Hiroshi Ezura (2012) Mapping of Micro-Tom BAC-end Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms. International Journal of Plant Genomics: 8 pages. doi:10.1155/2012/437026 (November 27, 2012).
  28. Fabien Mounet, Annick Moing, Mariusz Kowalczyk, Johannes Rohrmann, Johann Petit, Virginie Garcia, Mickael Maucourt, Kentaro Yano, Catherine Deborde, Koh Aoki, Hélène Bèrges, Antonio Granell, Alisdair R. Fernie, Catherine Bellini, Christophe Rothan, Martine Lemaire-Chamley (2012) Down-regulation of a Single Auxin Efflux Transport Protein in Tomato Induces Precocious Fruit Development. Journal of Experimental Botany 63 (13): 4901-4917. doi:10.1093/jxb/ers167 (August 24, 2012, Epub: July 27, 2012).
  29. Tsuyoshi Habu, Hisayo Yamane, Kaori Igarashi, Kazuki Hamada, Kentaro Yano, Ryutaro Tao (2012) 454-Pyrosequencing of the Transcriptome in Leaf and Flower Buds of Japanese Apricot (Prunus mume Sieb. et Zucc.) at Different Dormant Stages. Journal of the Japanese Society for Horticultural Science 81 (3): 239-250. doi:10.2503/jjshs1.81.239 (July 21, 2012).
  30. The Tomato Genome Consortium (2012) The Tomato Genome Sequence Provides Insights into Fleshy Fruit Evolution. Nature 485: 635- 641. doi:10.1038/nature11119 (May 31, 2012, Epub: May 30, 2012).
  31. Alagu Manickavelu, Kanako Kawaura, Kazuko Oishi, Tadasu Shin-I, Yuji Kohara, Nabila Yahiaoui, Beat Keller, Reina Abe, Ayako Suzuki, Taishi Nagayama, Kentaro Yano, Yasunari Ogihara (2012) Comprehensive Functional Analyses of Expressed Sequence Tags in Common Wheat (Triticum aestivum). DNA Research 19 (2): 165-177. doi:10.1093/dnares/dss001 (April 2, 2012, Epub: February 14, 2012).
  32. Hiromi Nishida, Reina Abe, Taishi Nagayama, Kentaro Yano (2012) Genome Signature Difference Between Deinococcus radiodurans and Thermus thermophilus. International Journal of Evolutionary Biology: 6 pages. doi:10.1155/2012/205274 (Epub: March 4, 2012).
  33. Kentaro Hamamoto, Toshihiko Aki, Mikao Shigyo, Shigeru Sato, Tetsuya Ishida, Kentaro Yano, Tadakatsu Yoneyama, Shuichi Yanagisawa (2012) Proteomic Characterization of the Greening Process in Rice Seedlings Using the MS Spectral Intensity-based Label Free Method. Journal of Proteome Research 11 (1): 331-347. doi:10.1021/pr200852q (January 1, 2012, Epub: November 11, 2011).
  34. Koichiro Aya, Go Suzuki, Keita Suwabe, Tokunori Hobo, Hirokazu Takahashi, Katsuhiro Shiono, Kentaro Yano, Nobuhiro Tsutsumi, Mikio Nakazono, Yoshiaki Nagamura, Makoto Matsuoka, Masao Watanabe (2011) Comprehensive Network Analysis of Anther-expressed Genes in Rice by the Combination of 33 Laser Microdissection and 143 Spatiotemporal Microarrays. PLOS ONE 6 (10): e26162. doi:10.1371/journal.pone.0026162 (Epub: October 26, 2011).
  35. Sota Fujii, Takushi Toda, Shunsuke Kikuchi, Ryutaro Suzuki, Koji Yokoyama, Hiroko Tsuchida, Kentaro Yano, Kinya Toriyama (2011) Transcriptome Map of Plant Mitochondria Reveals Islands of Unexpected Transcribed Regions. BMC Genomics 12: 279. doi:10.1186/1471-2164-12-279 (Jun 1, 2011).
  36. Kazuki Hamada, Kohei Hongo, Keita Suwabe, Akifumi Shimizu, Taishi Nagayama, Reina Abe, Shunsuke Kikuchi, Naoki Yamamoto, Takaaki Fujii, Koji Yokoyama, Hiroko Tsuchida, Kazumi Sano, Takako Mochizuki, Nobuhiko Oki, Youko Horiuchi, Masahiro Fujita, Masao Watanabe, Makoto Matsuoka, Nori Kurata, Kentaro Yano (2011) OryzaExpress : An Integrated Database of Gene Expression Networks and Omics Annotations in Rice. Plant & Cell Physiology 52 (2): 220-229. doi:10.1093/pcp/pcq195 (February 2, 2011, Epub: December 23, 2010).
  37. Takayuki Ohnishi, Hideki Takanashi, Mirai Mogi, Hirokazu Takahashi, Shunsuke Kikuchi, Kentaro Yano, Takashi Okamoto, Masahiro Fujita, Nori Kurata, Nobuhiro Tsutsumi (2011) Distinct Gene Expression Profiles in Egg and Synergid Cells of Rice as Revealed by Cell Type-Specific Microarrays. Plant Physiology 155 (2): 881-891. doi:10.1104/pp.110.167502 (February 2011, Epub: November 24, 2010).
  38. Takeshi Oshino, Shinya Miura, Syunsuke Kikuchi, Kazuki Hamada, Kentaro Yano, Masao Watanabe, Atsushi Higashitani (2011) Auxin Depletion in Barley Plants Under High-temperature Conditions Represses DNA Proliferation in Organelles and Nuclei via Transcriptional Alterations. Plant, Cell & Environment 34 (2): 284-290. doi:10.1111/j.1365-3040.2010.02242.x (February 2011, Epub: November 12, 2010).
  39. Nozomu Sakurai, Takeshi Ara, Yoshiyuki Ogata, Ryosuke Sano, Takashi Ohno, Kenjiro Sugiyama, Atsushi Hiruta, Kiyoshi Yamazaki, Kentaro Yano, Koh Aoki, Asaph Aharoni, Kazuki Hamada, Koji Yokoyama, Shingo Kawamura, Hirofumi Otsuka, Toshiaki Tokimatsu, Minoru Kanehisa, Hideyuki Suzuki, Kazuki Saito, Daisuke Shibata (2011) KaPPA-View4 : a Metabolic Pathway Database for Representation and Analysis of Correlation Networks of Gene Co-expression and Metabolite Co-accumulation and Omics Data. Nucleic Acids Research 39 (suppl 1): D677-D684. doi:10.1093/nar/gkq989 (January 2011, Epub: November 19, 2010).
  40. Masahiro Fujita, Youko Horiuchi, Yayoi Ueda, Yoko Mizuta, Takahiko Kubo, Kentaro Yano, Shinichiro Yamaki, Katutoshi Tsuda, Toshifumi Nagata, Mitsuru Niihama, Hirotaka Kato, Shunsuke Kikuchi, Kazuki Hamada, Takako Mochizuki, Takeshi Ishimizu, Hiroaki Iwai, Nobuhiro Tsutsumi, Nori Kurata (2010) Rice Expression Atlas in Reproductive Development. Plant & Cell Physiology 51 (12): 2060-2081. doi:10.1093/pcp/pcq165 (December 2010, Epub: November 9, 2010).
  41. Alagu Manickavelu, Kanako Kawaura, Kazuko Oishi, Tadasu Shin-I, Yuji Kohara, Nabila Yahiaoui, Beat Keller, Ayako Suzuki, Kentaro Yano, Yasunari Ogihara (2010) Comparative Gene Expression Analysis of Susceptible and Resistant Near-isogenic Lines in Common Wheat Infected by Puccinia triticina. DNA Research 17 (4): 211-222. doi:10.1093/dnares/dsq009 (August 2010, Epub: April 1, 2010).
  42. Susumu Oda†, Fumi Kaneko† († These authors contributed equally to this work.), Kentaro Yano, Tomoaki Fujioka, Hiromi Masuko, Jong-In Park, Shunsuke Kikuchi, Kazuki Hamada, Makoto Endo, Kuniaki Nagano, Yoshiaki Nagamura, Makiko Kawagishi-Kobayashi, Keita Suwabe, Go Suzuki, Masao Watanabe (2010) Morphological and Gene Expression Analysis Under Cool Temperature Conditions in Rice Anther Development. Genes & Genetic Systems 85 (2): 107-120. doi:10.1266/ggs.85.107 (Jun 15, 2010).
  43. Sota Fujii, Mari Yamada, Masahiro Fujita, Etsuko Itabashi, Kazuki Hamada, Kentaro Yano, Nori Kurata, Kinya Toriyama (2010) Cytoplasmic-Nuclear Genomic Barriers in Rice Pollen Development Revealed by Comparison of Global Gene Expression Profiles Among Five Independent Cytoplasmic Male Sterile Lines. Plant & Cell Physiology 51 (4): 610-620. doi:10.1093/pcp/pcq026 (April 2010, Epub: March 4, 2010).
  44. Koh Aoki†, Kentaro Yano† († These authors contributed equally to this work.), Ayako Suzuki, Shingo Kawamura, Nozomu Sakurai, Kunihiro Suda, Atsushi Kurabayashi, Tatsuya Suzuki, Taneaki Tsugane, Manabu Watanabe, Kazuhide Ooga, Maiko Torii, Takanori Narita, Tadasu Shin-I, Yuji Kohara, Naoki Yamamoto, Hideki Takahashi, Yuichiro Watanabe, Mayumi Egusa, Motoichiro Kodama, Yuki Ichinose, Mari Kikuchi, Sumire Fukushima, Akiko Okabe, Tsutomu Arie, Yuko Sato, Katsumi Yazawa, Shinobu Satoh, Toshikazu Omura, Hiroshi Ezura, Daisuke Shibata (2010) Large-scale Analysis of Full-length cDNAs from the Tomato (Solanum lycopersicum) Cultivar Micro-Tom, a Reference System for the Solanaceae Genomics. BMC Genomics 11 (1): 210. doi:10.1186/1471-2164-11-210 (March 30, 2010).
  45. Akifumi Shimizu, Kentaro Yano (2010) Gene Discovery Methods from Large-Scale Gene Expression Data. In Quantum Bio-Informatics III From Quantum Information to Bio-Informatics 1: 489-496. doi:10.1142/9789814304061_0040 (January 2010).
  46. Makoto Endo, Tohru Tsuchiya, Kazuki Hamada, Shingo Kawamura, Kentaro Yano, Masahiro Ohshima, Atsushi Higashitani, Masao Watanabe, Makiko Kawagishi-Kobayashi (2009) High Temperatures Cause Male Sterility in Rice Plants with Transcriptional Alterations During Pollen Development. Plant & Cell Physiology 50 (11): 1911- 1922. doi:10.1093/pcp/pcp135 (November 2009, Epub: October 6, 2009).
  47. Koichiro Aya, Miyako Ueguchi-Tanaka, Maki Kondo, Kazuki Hamada, Kentaro Yano, Mikio Nishimura, Makoto Matsuoka (2009) Gibberellin Modulates Anther Development in Rice via the Transcriptional Regulation of GAMYB. The Plant Cell 21 (5): 1453-1472. doi:10.1105/tpc.108.062935 (March 2009, Epub: May 19, 2009).
  48. 浅尾浩史, 奥山恵里, 矢野健太郎, 西本登志, 北條雅也, 高山誠司 (2009) S ハプロタイプに基づく Brassica rapa L. Oleifera Group に属するツケナの遺伝的関係. 近畿中国四国農業研究 (14): 41-46. (2009年3月).
  49. Kentaro Yano, Koh Aoki, Hideyuki Suzuki, Daisuke Shibata (2009) DAGViz : a Directed Acyclic Graph Browser That Supports Analysis of Gene Ontology Annotation. Plant Biotechnology 26 (1): 9-13. doi:10.5511/plantbiotechnology.26.9 (March 27, 2009).
  50. Tokunori Hobo, Keita Suwabe, Koichiro Aya, Go Suzuki, Kentaro Yano, Takeshi Ishimizu, Masahiro Fujita, Shunsuke Kikuchi, Kazuki Hamada, Masumi Miyano, Tomoaki Fujioka, Fumi Kaneko, Tomohiko Kazama, Yoko Mizuta, Hirokazu Takahashi, Katsuhiro Shiono, Mikio Nakazono, Nobuhiro Tsutsumi, Yoshiaki Nagamura, Nori Kurata, Masao Watanabe, Makoto Matsuoka (2008) Various Spatiotemporal Expression Profiles of Anther-Expressed Genes in Rice. Plant & Cell Physiology 49 (10): 1417-1428. doi:10.1093/pcp/pcn128 (October 2008, Epub: September 6, 2008).
  51. Keita Suwabe, Go Suzuki, Hirokazu Takahashi, Katsuhiro Shiono, Makoto Endo, Kentaro Yano, Masahiro Fujita, Hiromi Masuko, Hiroshi Saito, Tomoaki Fujioka, Fumi Kaneko, Tomohiko Kazama, Yoko Mizuta, Makiko Kawagishi-Kobayashi, Nobuhiro Tsutsumi, Nori Kurata, Mikio Nakazono, Masao Watanabe (2008) Separated Transcriptomes of Male Gametophyte and Tapetum in Rice : Validity of a Laser Microdissection (LM) Microarray. Plant & Cell Physiology 49 (10): 1407-1416. doi:10.1093/pcp/pcn124 (October 2008, Epub: August 28, 2008).
  52. Nobuhiko Oki†, Kentaro Yano†, Yutaka Okumoto, Takuji Tsukiyama, Masayoshi Teraishi, Takatoshi Tanisaka († These authors contributed equally to this work.) (2008) A Genome-Wide View of Miniature Inverted-repeat Transposable Elements (MITEs) in Rice, Oryza Sativa Ssp. Japonica. Genes & Genetic Systems 83 (4): 321-329. doi:10.1266/ggs.83.321 (October 19, 2008).
  53. 浅尾浩史, 奥山恵里, 矢野健太郎, 西本登志, 北條雅也, 越智康治, 梶田季生, 高山誠司. (2008) 採種地が異なる大和マナ (Brassica rapa L. Oleifera Group) の S ハプロタイプの推定. 園芸学研究 7 (4): 505-510. doi:10.2503/hrj.7.505 (2008年10月15日).
  54. Tsuyoshi Nakagawa, Akira Nakatsuka, Kentaro Yano, Shiho Yasugahira, Ryoko Nakamura, Ningjing Sun, Akihiro Itai, Takamasa Suzuki, Hiroyuki Itamura (2008) Expressed Sequence Tags from Persimmon at Different Developmental Stages. Plant Cell Reports 27 (5): 931-938. doi:10.1007/s00299-008-0518-9 (May 2008, Epub: February 27, 2008).
  55. Yoichi Ogawa†, Tomoko Dansako†, Kentaro Yano, Nozomu Sakurai, Hideyuki Suzuki, Koh Aoki, Masaaki Noji, Kazuki Saito, Daisuke Shibata († These authors contributed equally to this work.) (2008) Efficient and High-throughput Vector Construction and Agrobacterium-mediated Transformation of Arabidopsis Thaliana Suspension-cultured Cells for Functional Genomics. Plant & Cell Physiology 49 (2): 242-250. doi:10.1093/pcp/pcm181 (February 2008, Epub: January 4, 2008).
  56. Koh Aoki, Kentaro Yano, Nozomu Sakurai, Taneaki Tsugane, Manabu Watanabe, Yong-Gen Yin, Chiaki Matsukura, Daisuke Shibata (2007) EXPRESSION-BASED APPROACH TOWARD FUNCTIONAL CHARACTERIZATION OF TOMATO GENES THAT HAVE NO OR WEAK SIMILARITY TO ARABIDOPSIS GENES. Acta Horticulturae (International Society for Horticultural Science) 745:457-464.
  57. Ken Naito, Eunyoung Cho, Guojun Yang, Matthew Campbell, Kentaro Yano, Yutaka Okumoto, Takatoshi Tanisaka, Susan R. Wessler (2006) Dramatic Amplification of a Rice Transposable Element During Recent Domestication. Proceedings of the National Academy of Sciences 103 (47): 17620-17625. doi:10.1073/pnas.0605421103 (November 21, 2006, Epub: November 13, 2006).
  58. Kyoko Yamane, Kentaro Yano, Taihachi Kawahara (2006) Pattern and Rate of Indel Evolution Inferred from Whole Chloroplast Intergenic Regions in Sugarcane, Maize and Rice. DNA Research 13 (5): 197-204. doi:10.1093/dnares/dsl012 (October 17, 2006, Epub: November 16, 2006).
  59. Kentaro Yano†*, Kazuhide Imai†, Akifumi Shimizu†, Takao Hanashita† († These authors contributed equally to this work. *Corresponding author) (2006) A New Method for Gene Discovery in Large-Scale Microarray Data. Nucleic Acids Research 34 (5): 1532-1539. doi:10.1093/nar/gkl058 (March 2006, Epub: March 14, 2006).
  60. Kentaro Yano, Taneaki Tsugane, Manabu Watanabe, Fumi Maeda, Koh Aoki, Daisuke Shibata (2006) Non-Biased Distribution of Tomato Genes with No Counterparts in Arabidopsis thaliana in Expression Patterns During Fruit Maturation. Plant Biotechnology 23 (2): 199-202. doi:10.5511/plantbiotechnology.23.199 (August 30, 2006).
  61. Kentaro Yano, Manabu Watanabe, Naoki Yamamoto, Taneaki Tsugane, Koh Aoki, Nozomu Sakurai, Daisuke Shibata (2006) MiBASE : a Database of a Miniature Tomato Cultivar Micro-Tom. Plant Biotechnology 23 (2): 195-198. doi:10.5511/plantbiotechnology.23.195 (August 30, 2006).
  62. Kentaro Yano, Tomoko Dansako, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata (2005) KATANA : A Web-Based Guide to Public Databases for Arabidopsis Genomic Information. Plant Biotechnology 22 (3): 225-229. doi:10.5511/plantbiotechnology.22.225 (September 25, 2005).
  63. Naoki Yamamoto, Taneaki Tsugane, Manabu Watanabe, Kentaro Yano, Fumi Maeda, Chikara Kuwata, Torki Moez, Yusuke Ban, Shigeo Nishimura, Daisuke Shibata (2005) Expressed Sequence Tags from the Laboratory-grown Miniature Tomato (Lycopersicon esculentum) Cultivar Micro-Tom and Mining for Single Nucleotide Polymorphisms and Insertions/deletions in Tomato Cultivars. Gene 356: 127-134. doi:10.1016/j.gene.2005.04.026 (August 15, 2005).
  64. Taneaki Tsugane, Manabu Watanabe, Kentaro Yano, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata (2005) Expressed Sequence Tags of Full-length cDNA Clones from the Miniature Tomato (Lycopersicon esculentum) Cultivar Micro-Tom. Plant Biotechnology 22 (2): 161-165. doi:10.5511/plantbiotechnology.22.161 (July 20, 2005).
  65. Kentaro Yano, Ryo Ohsawa, Katsuei Yonezawa (2002) Cost Efficiency of Spatial Error Control in Single Plant Selection. Breeding Science 52 (3): 177-184. doi:10.1270/jsbbs.52.177 (September 10, 2002).
  66. Katsuei Yonezawa, Takuro Ishii, Kentaro Yano (2000) Definition of the Probability Efficiency Index for Optimization of the Stepwise Yield Selection Procedures of Plant Varieties. Biometrics 56 (4): 1213-1217. doi:10.1111/j.0006-341X.2000.01213.x (December 2000, Epub: 24 May 2004).
  67. Kentaro Yano, Takuro Ishii, Hiroshi Ikehashi, Katsuei Yonezawa (2000) Optimization of the Number of Cycles and Intensity of Selection, and Population Size in Mass Selection : Selection for Single Traits in Outcrossing Plant Populations. Breeding Science 50 (1): 37-44. doi:10.1270/jsbbs.50.37 (March 2000, Epub: July 21, 2010).
  68. Katsuei Yonezawa, Kentaro Yano, Takuro Ishii, Tetsuro Nomura (1999) A Theoretical Basis for Measuring the Efficiency of Selection in Plant Breeding. Heredity 82 (4): 401-408. doi:10.1038/sj.hdy.6884950 (April 1999).

論説

  1. Hajime Ohyanagi, Takeshi Obayashi, Kentaro Yano (2016) Editorial: Plant & Cell Physiology's 2016 Online Database Issue. Plant Cell Physiol (2016) 57 (1): 1-3 doi:10.1093/pcp/pcv205 (January 2016).
  2. Hajime Ohyanagi, Takeshi Obayashi, Kentaro Yano (2015) Editorial. Plant & Cell Physiology 56 (1): 4-6. doi:10.1093/pcp/pcu206 (January 2015, Epub: January 20, 2015).
  3. Takeshi Obayashi, Kentaro Yano (2014) Editorial. Plant & Cell Physiology 55 (1): 1-2. doi:10.1093/pcp/pct193 (January 2014).
  4. Takeshi Obayashi, Kentaro Yano (2013) Editorial. Plant & Cell Physiology 54 (2): 169-170. doi:10.1093/pcp/pct011 (February 2013).
  5. Makoto Matsuoka, Kentaro Yano (2010) Editorial. Plant & Cell Physiology 51 (8): 1247. doi:10.1093/pcp/pcq106 (August 2010).

総説 (査読あり)

  1. Koh Aoki, Yoshiyuki Ogata, Kaori Igarashi, Kentaro Yano, Hideki Nagasaki, Eli Kaminuma, Atsushi Toyoda (2013) Functional genomics of tomato in a post-genome-sequencing phase. Breeding Science 63 (1): 14-20. doi:10.1270/jsbbs.63.14 (March 2013, Epub: March 1, 2013).
  2. Ayako Suzuki†, Keita Suwabe†, Kentaro Yano* († These authors contributed equally to this work. *Corresponding author) (2009) Web Databases for Omics Data in Tomato. Journal of the Japanese Society for Horticultural Science 78 (1): 23-31. doi:10.2503/jjshs1.78.23 (January 28, 2009).
  3. Keita Suwabe†, Kentaro Yano†* († These authors contributed equally to this work. *Corresponding author) (2008) Omics databases in plant science : key to systems biology. Plant Biotechnology 25 (5): 413-422. doi:10.5511/plantbiotechnology.25.413 (September 26, 2008).
  4. Kentaro Yano, Koh Aoki, Daisuke Shibata (2007) Genomic Databases for Tomato. Plant Biotechnology 24 (1): 17-25. doi:10.5511/plantbiotechnology.24.17 (December 10, 2007).
  5. 矢野健太郎, 柴田大輔 (2006) 講座 「植物栄養学研究へのゲノム科学のインパクト」 バイオインフォマティクスの農学への応用 土壌肥料学会誌 77巻2号, p.213-218 (2006年4月5日).

総説 (査読なし)

  1. 小林 正明, 門田 有希, 望月 孝子, 工藤 徹, 寺島 伸, 中村 幸乃, 中村 保一, 矢野健太郎 (2016) 「Perl講習会」 育種学研究, Vol.18, No.1, p.27-33. doi:10.1270/jsbbr.18.27 (2016年3月25日).
  2. 工藤徹, 寺島伸, 矢野健太郎 (2015) 「統合オミックス情報解析と作物育種への利用」 月刊バイオインダストリー, 2015年12月号, p.10-16 (2015年12月12日).
  3. 神沼英里, 望月孝子, 門田有希, 小林正明, 大柳一, 矢野健太郎 (2015) 「遺伝研スパコンとコマンドラインでのNGSデータ使い倒し講座」 育種学研究, Vol.17, No.2, p.88-93. doi:10.1270/jsbbr.17.88 (2015年7月3日).
  4. 小林正明, 大柳一, 矢野健太郎, 岩田洋佳 (2014) 「植物育種のためのオミックス・データ解析入門」 育種学研究, Vol.16, No.2, p.93-99. doi:10.1270/jsbbr.16.93 (2014年07月17日).
  5. 神沼英里, 七夕高也, 矢野健太郎, 清水顕史, 岩田洋佳 (2013) 「育種のための情報解析ツール使い倒し塾」 育種学研究, Vol.15, No.3, p.122-127. doi:10.1270/jsbbr.15.122 (2013年10月23日).
  6. 本郷耕平, 諏訪部圭太, 矢野健太郎 (2010) 「植物科学におけるバイオインフォマティクス活用法. 1. オミックス・データを活用するためのデータベースと研究基盤」 化学と生物, Vol.48, No.12, p.844-854. doi:10.1271/kagakutoseibutsu.48.844 (2011年12月01日).

紀要

  1. 米澤勝衛, 矢野健太郎 (2000) 「他殖性作物におけるMass selection法の最適化に関する理論的一考察」 京都産業大学国土利用開発研究所紀要, 第21号, p.75-88.

著書

  1. Toru Kudo, Shin Terashima, Yuno Takaki, Yukino Nakamura, Masaaki Kobayashi and Kentaro Yano* (*; Corresponding authors) (2017) Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza Sativa and Other Plant Species. Plant Genomics Databases. Editors: van Dijk, Aalt-Jan, Springer, pp.229-240.
  2. Masaaki Kobayashi, Hajime Ohyanagi, Kentaro Yano (2016) Databases for Solanaceae and Cucurbitaceae Research. Functional Genomics and Biotechnology in Solanaceae and Cucurbitaceae Crops. Ezura H., Ariizumi T., Garcia-Mas J., Rose J. (Editors), Springer, pp.31-42. 2016年1月5日刊行
  3. Masaaki Kobayashi, Hajime Ohyanagi, Kentaro Yano (2015) Expression Analysis and Genome Annotations with RNA Sequencing. Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approaches. Sablok, G. etal. (Editors), Springer, pp.1-12. 2015年8月29日刊行
  4. Masaaki Kobayashi, Hajime Ohyanagi, Kentaro Yano (2015) Omics Analysis and Databases for Plant Science. Genomics (Chapter 13) Proteomics and Metabolomics in Nutraceuticals and Functional Foods, Second Edition. Debasis Bagchi, Anand Swaroop, Manashi Bagchi. (Editors), John Wiley & Sons, Ltd., Published Online, pp.150-159. 2015年8月14日刊行
  5. Masaaki Kobayashi, Hajime Ohyanagi, Kentaro Yano (2014) Omics databases and gene expression networks in plant sciences. Omics Technologies and Crop Improvement. Noureddine Benkeblia (Editor), CRC Press, pp.1-14. 2014年10月14日刊行
  6. 小林正明, 大柳一, 矢野健太郎 遺伝子治療・診断の最先端技術と新しい医薬品・診断薬の開発, 第15章 3節 「植物遺伝情報データベースの活用方法」, 技術情報協会. 2014年5月31日刊行
  7. Ayako Suzuki, Keita Suwabe, Kentaro Yano (2011) The use of omics databases for plants. Sustainable Agriculture and New Biotechnologies. Noureddine Benkeblia (Editor), CRC Press, pp.1-22. 2011年7月11日刊行
  8. 生物学辞典 東京化学同人 創業50周年記念出版, 東京化学同人. 2010年12月10日刊行
  9. 植物育種学辞典 日本育種学会編, 培風館. 2005年9月8日刊行
  10. バイオデータベースの手取り足取り活用法 編集 : 中村保一, 磯合敦, 石川淳, 羊土社. 2002年12月刊行